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mRNAid
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Version: 1.0.0
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1
Input Parameters
2
In Progress
3
Results
1
Sequence
Five Prime Flanking Sequence (5' UTR)
Coding Sequence
Click or drag file to this area to upload .fa, .fasta or .gb files
Three Prime Flanking Sequence (3' UTR)
2
Optimization parameters
Codon Usage
Homo Sapiens
Mus musculus
Codon Usage Frequency Threshold Percentage
Optimization Criterion
Match codon usage
Maximize Codon Adaptation Index (CAI)
Match dinucleotides usage
Match codon pair usage
Uridine depletion
Use more precise MFE estimation
Avoid motifs
None
Global GC Content (%)
MIN
MAX
Window size for local GC content
Entropy Window Size
Number of Sequences
Reset
Example
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